Publications

External links: Google Scholar and DBLP (Uni trier)

2016

PGSB/MIPS Plant Genome Information Resources and Concepts for the Analysis of Complex Grass Genomes
Spannagl M, Bader KC, Pfeifer M, Nussbaumer T, Mayer KF
Plant Bioinformatics: Methods and Protocols, 2016;1374:165-86
PMID 26519405, DOI 10.1007/978-1-4939-3167-5_8

2015

PGSB PlantsDB: updates to the database framework for comparative plant genome research
Spannagl M, Nussbaumer T, Bader KC, Martis MM, Seidel M, Kugler KG, Gundlach H, Mayer KF
Nucleic Acids Res., 2015 Nov, pii: gkv1130
PMID 26527721

DroughtDB: an expert-curated compilation of plant drought stress genes and their homologs in nine species
Alter S, Bader KC, Spannagl M, Wang Y, Bauer E, Schön CC, Mayer KF
Database (Oxford), 2015 Apr, 2015:bav046
PMID 25979979, DOI 10.1093/database/bav046

2014

chromoWIZ: a web tool to query and visualize chromosome-anchored genes from cereal and model genomes
Nussbaumer T, Kugler KG, Schweiger W, Bader KC, Gundlach H, Spannagl M, Poursarebani N, Pfeifer M, Mayer KF
BMC Plant Biol, 2014 Nov, 14:348
PMID 25491094, DOI 10.1186/s12870-014-0348-6

Convergent targeting of a common host protein-network by pathogen effectors from three kingdoms of life
Weßling R, Epple P, Altmann S, He Y, Yang L, Henz SR, McDonald N, Wiley K, Bader KC, Gläßer C, Mukhtar MS, Haigis S, Ghamsari L, Stephens AE, Ecker JR, Vidal M, Jones JD, Mayer KF, Ver Loren van Themaat E, Weigel D, Schulze-Lefert P, Dangl JL, Panstruga R, Braun P
Cell Host Microbe, 2014 Sep, 16(3):364-75
PMID 25211078, DOI 10.1016/j.chom.2014.08.004

RNASeqExpressionBrowser-a web interface to browse and visualize high-throughput expression data
Nussbaumer T, Kugler KG, Bader KC, Sharma S, Seidel M, Mayer KF
Bioinformatics, 2014 Sep, 30(17):2519-20
PMID 24833805, DOI 10.1093/bioinformatics/btu334

A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome
International Wheat Genome Sequencing Consortium (IWGSC)
Science, 2014 Jul, 345(6194):1251788
PMID 25035500, DOI 10.1126/science.1251788

Ancient hybridizations among the ancestral genomes of bread wheat
Marcussen T, Sandve SR, Heier L, Spannagl M, Pfeifer M, International Wheat Genome Sequencing Consortium, Jakobsen KS, Wulff BB, Steuernagel B, Mayer KF, Olsen OA
Science, 2014 Jul, 345(6194):1250092
PMID 25035499, DOI 10.1126/science.1250092

Genome interplay in the grain transcriptome of hexaploid bread wheat
Pfeifer M, Kugler KG, Sandve SR, Zhan B, Rudi H, Hvidsten TR, International Wheat Genome Sequencing Consortium, Mayer KF, Olsen OA
Science, 2014 Jul, 345(6194):1250091
PMID 25035498, DOI 10.1126/science.1250091

2013

High-performance approaches to the comprehensive computation and evaluation of signatures in bacterial sequence datasets
Bader KC
Universitätsbibliothek der TU München, Diss., 2013 Apr
urn:nbn:de:bvb:91-diss-20130211-1115588-0-4

MIPS PlantsDB: a database framework for comparative plant genome research
Nussbaumer T, Martis MM, Roessner SK, Pfeifer M, Bader KC, Sharma S, Gundlach H, Spannagl M
Nucleic Acids Res, 2013 Jan, 41(Database issue):D1144-51
PMID 23203886, DOI 10.1093/nar/gks1153

2012

Efficient relaxed search in hierarchically clustered sequence datasets
Bader KC, Atallah MJ, Grothoff C
ACM J. Exp. Algorithmics, 2012 Feb, 17(1):1.4:1.1–1.4:1.18.
DOI 10.1145/2133803.2212315

2011

Interactive primer- and probe-design with CaSSiS
Bader KC, Meier H
Poster at the German Conference on Bioinformatics (GCB), München. 2011 Sep.
PDF-Document

Comprehensive and relaxed search for oligonucleotide signatures in hierarchically clustered sequence datasets
Bader KC, Grothoff C, Meier H
Bioinformatics, 2011 Jun, 27(11):1546-54
PMID 21471017, DOI 10.1093/bioinformatics/btr161

ARB: A software environment for sequence data
Westram R, Bader KC, Prüsse E, Kumar Y, Meier H, Glöckner FO, Ludwig W
Frans J. de Bruijn (ed.), Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches, pages 399-406. John Wiley & Sons, Hoboken, New Jersey. 2011 May.
DOI 10.1002/9781118010518.ch46

2010

Distributed stream processing with DUP
Bader KC, Eißler T, Evans NS, GauthierDickey C, Grothoff C, Grothoff K, Keene J, Meier H, Ritzdorf C, Rutherford MJ
Network and Parallel Computing, volume 6289 of Lecture Notes in Computer Science, pages 232-246. Springer Berlin / Heidelberg. 2010.
DOI 10.1007/978-3-642-15672-4_21, PDF-Document

2005

ARB-Genome: A software environment for the functional analysis of microbial genomes
Bader KC, Westram R, Kumar Y, Ludwig W, Meier H
Poster at the European Conference on Prokaryotic Genomes (ECPG), Göttingen. 2015 Sep.
PDF-Document